miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|262500201|gb|FP061157.1|FP061157 TACTACTCTCATACTCTCATCACAAAACAAAACCAATCACTCCTCCCTCCCTTTGGATTCGCCGGCGGCGGTTTCCTTTT
CTATTCTCCTCCATTTTGAGATGGACTCCCGCCGGCGATCGACCTCCAAAGCCACCACCGCCCCCCCACCACCACCACAC
ATGAAAATGAAAATGGGAGTGGGAGTGGGAGTGGGTCTACATCAACATCACAATGATAAAGAGCTCAAGGCCTCAGACGC
TTTGCCACTCCCACTTTACCTCACCAATGCTGTCTTCTTCACTCTGTTTTTCTCTGTGGTCTACTTCTTGCTCACTCGCT
GGCGTGAGAAGATTCGTAACTCCACCCCTCTTCATGTCCTTAACTTGTCTGAGATAGTCGCCATCTTCGCCTTCATCGCT
TCCTTCATCTACCTCCTTGGTTTCTTCGGAATCGATTTTGTCCAGTCGATTCTTCGACCTTCCACTGATCTCTGGCCTAA
CGAGGATGAAATCGACCATG




Most similar to sp|O64966|HMDH1_GOSHI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O64966|HMDH1_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A
           reductase 1 OS=Gossypium hirsutum GN=HMG1 PE=3 SV=1
          Length = 585

 Score =  133 bits (334), Expect = 6e-31
 Identities = 67/93 (72%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
 Frame = +2

Query: 215 DKELKASDALPLPLYLTNAVFFTLFFSVVYFLLTRWREKIRNSTPLHVLNLSEIVXXXXX 394
           D   KASDALPLPLYLTNAVFFTLFFS VYFLL RWREKIR+STPLHV+  SEIV     
Sbjct: 25  DDSTKASDALPLPLYLTNAVFFTLFFSAVYFLLCRWREKIRSSTPLHVVTFSEIVAILAS 84

Query: 395 XXXXXYLLGFFGIDFVQS-ILRPSTDLWPNEDE 490
                YLLGFFGIDFVQS +LRPS D+W  ED+
Sbjct: 85  VASFIYLLGFFGIDFVQSLVLRPSADVWATEDD 117